Vet World   Vol.19   January-2026  Article - 7 

Whole-genome characterization and zoonotic insights of feline rotavirus A genotypes G3P[9] and novel G6P[9] circulating in domestic cats in Thailand

Yu Nandi Thaw¹ , Kamonpan Charoenkul^1,2 , Chanakarn Nasamran^1,2 , Ekkapat Chamsai³ , Waleemas Jairak^1,2 , Eaint Min Phyu¹ , Hnin Wai Phyu¹ , Supassama Chaiyawong^1,2 , Somsak Pakpinyo³ , and Alongkorn Amonsin^1,2

Background and Aim: Rotavirus A (RVA) is an enteric pathogen affecting both humans and animals, known for its zoonotic potential. Feline RVA (FeRVA) infections are increasingly reported worldwide; however, data remain limited in Thailand. This study aimed to determine the prevalence, genotype distribution, and whole-genome features of FeRVA found in domestic cats in Thailand, as well as to assess the potential for cross-species transmission. 

Materials and Methods: A cross-sectional survey was conducted from January 2022 to December 2023 in Bangkok and nearby provinces. Rectal swab samples (n = 636) were collected from both symptomatic and asymptomatic cats and screened for RVA using reverse-transcription polymerase chain reaction (RT-PCR) targeting the nonstructural protein 5 (NSP5) gene. Samples positive for FeRVA were subjected to whole-genome sequencing (WGS) using Oxford Nanopore technology. Genotypes were assigned based on all 11 gene segments, and phylogenetic analyses were performed using the neighbor-joining method to compare Thai strains with global RVA reference strains. 

Results: The FeRVA positivity rate was 1.41% (9/636). Three FeRVA-positive samples were successfully sequenced. Whole-genome analysis identified one strain as genotype G3P[9] and two strains as genotype G6P[9]. The G6P[9] strains showed the genetic constellation G6-P[9]-I2-R2-C2-M2-A3-N2-T3-E3-H3, identical to feline and human RVA G6P[9] strains previously reported in Japan. The G3P[9] strain displayed high nucleotide identity with Thai and East Asian human RVAs. Most FeRVA-positive cats were asymptomatic, and no significant association was found between infection status and age, season, or clinical signs. Analysis of the viral protein 7 antigenic regions revealed conserved amino acids, apart from a single substitution (S90P) in G6P[9]. 

Conclusion: This study reports the first detection of the novel FeRVA genotype G6P[9] in Thailand and provides comprehensive genomic evidence of FeRVA diversity in domestic cats. The close genetic relationship between Thai-FeRVA strains and human RVA strains highlights the potential for interspecies transmission. Enhanced surveillance and One Health–based monitoring are recommended to improve early detection and prevent zoonotic spread. 

Keywords: cats, feline rotavirus A, genetic characterization, genotype G3P[9], genotype G6P[9], Thailand, whole-genome sequencing, zoonotic transmission.

How to cite this article: Thaw YN, Charoenkul K, Nasamran C, Chamsai E, Jairak W, Phyu EM, et al. Whole-genome characterization and zoonotic insights of feline rotavirus A genotypes G3P[9] and novel G6P[9] circulating in domestic cats in Thailand. Vet World. 2026;19(1):81–96.

Received: 04-06-2025   Accepted: 03-12-2025   Published online: 08-01-2026

Corresponding author: Alongkorn Amonsin    E-mail: alongkorn.a@chula.ac.th

DOI: 10.14202/vetworld.2026.81-96

Copyright: Thaw, et al. This article is an open access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http:// creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.